statistics

Please wait...

Please wait...

Significance Analysis of INTeractome (SAINT) webtool
Creating the input files - Tutorial #1


Sample files: bait.txt and tuned_pd_file.txt

Generate the list of interactions - Tutorial #2



Sample files: prey.txt and interaction.txt

References
- Choi H, Glatter T, Gstaiger M, Nesvizhskii AI. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments. J Proteome Res. 2012 Apr 6;11(4):2619-24. doi: 10.1021/pr201185r
- Teo G, Liu G, Zhang J, Nesvizhskii AI, Gingras AC, Choi H. SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software. J Proteomics. 2014 Apr 4;100:37-43. doi: 10.1016/j.jprot.2013.10.023
- Choi H, Liu G, Mellacheruvu D, Tyers M, Gingras AC, Nesvizhskii AI. Analyzing protein-protein interactions from affinity purification-mass spectrometry data with SAINT. Curr Protoc Bioinformatics. 2012 Sep;Chapter 8:Unit8.15. doi: 10.1002/0471250953.bi0815s39